Create FASTA Format for MAFFT Alignment

This function creates a FASTA format output from representative setlists for use in MAFFT multiple sequence alignment.

Usage

create_setlist_fasta_mafft(representative_setlists)

Arguments

representative_setlists

A data frame containing two columns:

• showID: A character vector of show identifiers

• sequence: A character vector of encoded setlist sequences

Value

A character vector containing the FASTA format output, where each entry consists of a header line (>showID) followed by the corresponding sequence.

Examples

if (FALSE) { # \dontrun{
representative_setlists <- data.frame(
  showID = c("1408", "1320"),
  sequence = c("35 66 44 55 65 45 34 4F 59 48 5D 43 4A 57 68 51 6C 61 6D 42 6B 27",
               "35 66 44 5F 62 45 34 4F 59 48 5D 43 4A 57 68 51 60 69 6D 42 6B 27")
)
fasta_output <- create_setlist_fasta_mafft(representative_setlists)
print(fasta_output)
} # }